Hey All,
Thank you for your comments. I did not find a resolution to this issue as I needed to get things back on track so I bit the bullet and rescheduled the instances. Only had about 60 to reschedule. I do not have a test system to test any potential fixes. (KBA 1986781) seems to be for Unix/Linux environment. I am 2008R2SP1. Tomcat is SAP supplied as well as is the JRE that Tomcat is using. Tomcat on separate machine form CMS but all time settings on CMS host are and were fine. CMS host is physically located in same rack as BO server. I have had this issue with every version of BO that I have been on. XIR2, 3.1, 4.0 and now 4.1. I have a more serious problem that I need to address with 4.1 so I am going to post that before I submit a ticket.
Thank all of you for your time!